I am trying to batch process some 31P data with the AMARES quantification. I have saved starting_values.sv, prior_knowledge.pk, and overall_phasing.op files, which I would like to use with the batch function. Whenever I run the batch process, the apodize properly works, but the AMARES processing shows that it fails, despite showing the saved files for processing. I even tried running the saved actions on the original file which with I created the process. It still failed. Are there any additional steps needed for batch processing?
I tried running it through the jMRUI GUI. Will that process only work through the command line?
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