Error using NMR-scope – jmrui 7.0 – Linux

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  • #3154
    Justine Deborne


    I’m having trouble simulating the MRS spectra of certain metabolites using the NMR-scope tool (for Glutamine for example). It works fine for other metabolites like NAA, but for others when I select the metabolite and then try to launch the simulation with the predefined sequence PRESS at 144 ms, the software stops, with a message displayed on the terminal:

    # A fatal error has been detected by the Java Runtime Environment:
    # SIGSEGV (0xb) at pc=0x80e031fe, pid=47195, tid=0x91cffac0
    # JRE version: OpenJDK Runtime Environment (8.0_382-b05) (build 1.8.0_382-8u382-ga-1~22.04.1-b05)
    # Java VM: OpenJDK Server VM (25.382-b05 mixed mode linux-x86 )
    # Problematic frame:
    # C [] rotbch_+0x33e
    # Failed to write core dump. Core dumps have been disabled. To enable core dumping, try “ulimit -c unlimited” before starting Java again

    I have tried using another predefined sequences, same …
    And I think it can’t be related to available memory as there is enough RAM (64GB)

    Thank you for your help !! đŸ™‚


    Hello, are you talking about nmrscope or nmrscope-b?

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