[Candace Fleischer]

Thanks for your reply, Amber. I am using Linux for the batch analysis. I had to make a new .sh file to run the jmruicl command, which does work, but it doesn’t do the preprocessing correctly.

Are there plugins that will enable batch pre/processing in Linux?

[Candace Fleischer]

Hello,
I am having the same problem with HardPhaseAll and Zerofilling failing when running a batch script. I replaced the two plugins provided above and I am still having this problem. I am running jmrui v5.2 in Linux. I included the error message below. Additionally, the batch script doesn’t end properly so after each iteration, I need to manually quit the batch jmrui processing for the script to continue.

Thanks!

08-Apr-2016 12:04:21 INFO mrui.history.BatchDialog appendTextToHistory > HARDPHASEALL -77.9 2.386…
08-Apr-2016 12:04:21 INFO mrui.history.BatchDialog appendTextToHistory Failed!

08-Apr-2016 12:04:21 INFO mrui.history.BatchDialog appendTextToHistory > APODIZE Lorentzian 2.0…
08-Apr-2016 12:04:21 INFO mrui.history.BatchDialog appendTextToHistory Done!

08-Apr-2016 12:04:21 INFO mrui.history.BatchDialog appendTextToHistory > ZEROFILLING 1024…
08-Apr-2016 12:04:21 WARNING mrui.MruiLogger warning Plugin cannot be initialised for this command
java.lang.NullPointerException
at mrui.preprocessing.zerofilling.ZeroFillingPrepro.beginPreprocessing(Unknown Source)
at mrui.plugin.preprocessing.PreprocessingPlugin.defaultBatch(Unknown Source)
at mrui.preprocessing.zerofilling.ZeroFillingPrepro.batchPerform(Unknown Source)
at mrui.plugin.PluginManager.executeBatch(Unknown Source)
at mrui.history.Batch.executeLine(Unknown Source)
at mrui.history.Batch.runABatch(Unknown Source)
at mrui.history.Batch.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
08-Apr-2016 12:04:21 INFO mrui.history.BatchDialog appendTextToHistory Failed!

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