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You’re using slightly different options for apodize and hardphase than I was. The plugins worked for me, but I selected Gaussian for apodize and I selected hardphase > signal individually. I would say that the new plug-ins may not work for those options. Otherwise, I would suggest deleting the two old plugs and pasting in the new ones again.
Also, are you using this in windows or in linux? I believe the new plugins didn’t work for me in linux, so I’ve been using JMRUI on my windows terminal where they do work.
For when the batch doesn’t stop, the way I planned on getting around this is to write in a wait command directly into the terminal, find the process id, and then kill that process after wait it done. This has been the only way I could figure out how to get around the batch freezing at the end.
Just to clarify, the text file contains points on the spectra. I’m extracting one of the peaks from the spectra (just copy/pasting ~600 rows from column C in the .txt file that is generated). So, accessing these values from the .mrui file would also work. Any help would be appreciated!
I’m using version 5.2. Hardphase is working now, thanks!
The batch automatically outputs a file into the output directly as a .mrui file. I’ve been saving my files as .txt files so I can copy certain parts of the spectra into another template. Is there a way to save the output as a .txt file or convert the .mrui files to .txt files?Thank you so much!
Apodize and Zerofilling worked! However, hardphase is still failing. Could this be the same problem with the jar file?
Thanks!
Hello! Thank you, that was very helpful. Doing batch processing the wizard completes, but I’m getting some where errors.
My process is : select .rda file, batch file, and output directory.
My batch file is:
example.batch
ZEROFILLING 2048
HARDPHASESIGNAL 4.1 0.0
APODIZE Gaussian 4.0The script says zerofilling and hard phasing failed, but apodized worked.
I saved the batch file directly from the GUI, so I’m not sure why it isn’t processing correctly. Any help would be appreciated!
